NEWS: Research activities of VDSEE PhD-candidates

New papers from Lubna Younas and Mujahid Ali

Former VDSEE PhD-candidate Mujahid Ali and PhD-candidate Lubna Younas, both working in the group of Qi Zhou at the Department of Neurosciences and Developmental Biology, have published their recent findings in Nature Communications. In the publication titled "Development and evolution of Drosophila chromatin landscape in a 3D genome context" the authors characterize the changes of the Drosophila epigenomic landscape during development and underline the key role of transposable elements in genome organization and regulations. 

Link to the original publication

Lubna Younas also recently published a review titled "Evolution and regulation of animal sex chromosomes" in Nature Reviews Genetics. 

Link to the original publication

Our PhD students:

Archaea Biology and Ecogenomics:

Maximilian Dreer

Supervisor: Christa Schleper

Thesis topic: Biofilm formation and transformation of Ammonia Oxidizing Archaea

Marina Monserrat Díez 

Supervisor: Christa Schleper & Melina Kerou

Topic: Exploring the effects of biological nitrification inhibitors in the soil microbial communities

Angus Hilts

Supervisor: Simon Rittmann

Topic: Metabolic networks in Methanothemobacter marburgensis for cell factory development

Walter Hofmann

Supervisor: Simon Rittmann

Topic: Physiological and biotechnological characteristics of archaea for methane or bioplastics production

Anastasiia Padalko

Supervisor: Filipa Sousa

Topic: Metabolic traits prediction and validation in Archaea

Barbara Reischl

Supervisor: Simon Rittmann

Thesis topic: Physiological and biotechnological characteristics and application possibilities of archaeal co and pure cultures

Hayk Palabikyan

Supervisor: Simon Rittmann

Topic: Converting carbon dioxide into bioplastics

Thomas Pribasnig

Supervisor: Schleper Christa

Topic: Energy and carbon metabolism of Nitrososphaeria

Val Karavaeva (they/he)

Supervisor: Filipa Sousa

Topic: Rings of life and where to find them: evolution of tetrapyrroles

Nicole Catherina Krause

Supervisor: Silvia Bulgheresi

Topic: Chromosome organization and segregation in multicellular longitudinally dividing oral symbionts 

 


Bio-Oceanography and Marine Biology:

Sebastian Valerio Aymerich

Supervisor: Monika Bright

Topic: Dynamics of the Giant Ciliate Symbiosis: An Omics Study

Michaela Berensmeier

Supervisor: Martin Zuschin

Topic: Paloenvironmental changes of a shallow-water ecosystem in the Northern Adriadic Sea: Development of the community composition and its taphonomy

Guillem Coll García

Supervisor: Gerhard Herndl, Ramon Rossello-Mora & Raffael Bosch

Topic: Bacterial Adaptation to High Salinity 

Tina Palme

Supervisor: Petra Heinz

Topic: Laboratory feeding experiments of benthic foraminifera with a focus on their role in carbon and nitrogen fluxes

Alexandra Haselmair

Supervisor: Martin Zuschin

Topic: Historical ecology of the northern Adriatic sea: spatial and temoral distribution of the high biomass epifauna

Angelina Ivkic

Supervisor: Martin Zuschin

Topic: Red Sea coral reefs: A Pleistocene - Recent comparison

Petra Lukeneder

Supervisor: Martin Zuschin

Topic: Morphometry, taphonomy and geochemistry of late Triassic coleoids from the Polzberg Konservat-Lagerstätte near Lunz am See (Carnian, Reingraben shales, Lower Austria).

Giulia Marchioro

Supervisor: Luise Kruckenhauser, Pedro Frade, Igor Adameyko, Cecilia D'Angelo

Topic: Functional diversity of coral fluorescent proteins in mesophotic reefs

Philipp Pröts

Supervisor: Jörg Ott

Topic: Morphological adaptations to the symbiotic life-style of Stilbonematinae (Desmodoroidea, Nematoda)

Daniel Martinovic Saavedra

Supervisor: Federico Baltar

Topic: The role of enzyme promiscuity on organic phosphorus cycling in the ocean

Marilena Heitger

Supervisor: Gerhard Herndl

Topic: Shedding light on dark ocean’s detrital particles: origin, composition, and age

Teresa Maria Rosa Winter

Supervisor: Monika Bright

Topic: Ecology of Zoothamnium assemblages on experimental shallow water wood falls

Dmytro Spriahailo

Supervisor: Gerhard Herndl and Thomas Reinthaler

Topic: Diversity and metabolic activity of bacteria in the sea-surface microlayer

Isabella Leonhard

Supervisor: Martin Zuschin

Topic: Survival of the smallest? The long-term impact of climate warming on the body size of non-commercial fishes in the Adriatic Sea


Environmental Change and Biodiversity

Michaela Berensmeier

Supervisor: Martin Zuschin

Topic: Paloenvironmental changes of a shallow-water ecosystem in the Northern Adriadic Sea: Development of the community composition and its taphonomy

Florian Danzinger

Supervisor: Stefan Dullinger, Thomas Wrbka

Topic: A safe operating space for agricultural landscapes: integrating green infrastructure, ecological restoration and stakeholder involvement

Tobias Schernhammer

Supervisor: Franz Essl & Bernd  Lenzer

Topic: Bridging the gap between population genetics and historic landscape ecology for large Branchiopods 

Alexandra Haselmair

Supervisor: Martin Zuschin

Topic: Historical ecology of the northern Adriatic sea: spatial and temoral distribution of the high biomass epifauna

Johannes Hausharter

Supervisor: Stefan Dullinger

Topic: The role of micro-climate and micro-environment for population dynamics of alpine plants

Norbert Helm

Supervisor: Stefan Dullinger, Karl Hülber, Dietmar Moser, Johannes Wessely

Topic: Linking the micro- with the macroscale in alpine plant ecology

Angelina Ivkic

Supervisor: Martin Zuschin

Topic: Red Sea coral reefs: A Pleistocene - Recent comparison

Ekin Kaplan

Supervisor: Franz Essl

Topic: Temporal Changes and underlying Drivers of the Richness and Composition of Eu-rope’s Native and Non-Native Flora

Chytrý Kryštof

Supervisor: Stefan Dullinger

Topic: Effects of microclimate on distribution patterns of high alpine flora 

Elias Nikolas Kapitany

Supervisor: Stefan Dullinger

Topic: Semi-natural grasslands in Europe: Regional conservation value, recent development trends and drivers

Jennifer Hennenfeind

Supervisors: Franz Essl, Bernd Lenzner

Topic: Climate change and biodiversity loss as drivers for human conflicts

Ana Isabel Martinez Richart

Supervisor: Franz Essl, Jana Petermann

Topic: Landscape connectivity in forests.  A multi-taxa case study on stepping stones between the Dürrenstein-Lassingtal Wilderness Area, and the Kalkalpen and Gesäuse National Parks, Austria

Rym S. Nouioua

Supervisor: Stefan Dullinger and Bea Maas

Topic: Birds, bats and related ecosystem services in a European land-use context: linking conservation knowledge, agricultural practices and socio-ecological perspectives

Clemens Pachschwöll

Supervisor: Franz Essl

Topic: Detecting ‘invaders in disguise’  DNA barcoding of invasive plant species in Austria

Sonia Rashid

Supervisor: Stefan Dullinger

Topic: Modelling climate-driven range changes of European butterflies and their host plants - do transient dynamics matter? 

Parvin Safiyan Böldaji

Supervisor: Stefan Dullinger

Topic: Habitat suitability of the Asiatic cheetah (Acinonyx jubatus venaticus) and its primary prey species in north-eastern Iran

Anna Schertler

Supervisor: Franz Essl

Topic: Macroecological perspectives in invasion biology –  examining drivers of fungal and plant invasion patterns and processes

Tom Vorstenbosch

Supervisor: Stefan Dullinger, Franz Essl

Topic: Modelling the future of biological invasions in the sub-Antarctic under climate change

Pablo Aycart Lazo

Supervisor: Bea Maas and Stefan Dullinger

Topic: Functional diversity and interactions of birds, bats and arthropods in tropical cacao agroforestry systems: linking biodiversity conservation and ecosystem service management

 

 

Gilles Colling

Supervisor:  Franz Essl, Stefan Dullinger

Co-mentors: Michael Glaser, Hanno Seebens, Bernd Lenzner

Topic: Alien Species Accumulation Across Scales (ASAAS) 


Evolutionary Anthropology

Jeannette Becker

Supervisor: Sylvia Kirchengast

Topic: Comparative analysis of respiratory health during the medieval period in Austria

Leo Capari

Supervisor: Harald Wilfing

Topic: Anatomy of challenge driven R&I: The cases of energy transition and demographic change

Aigerim Rymbekova

Supervisor: Martin Kuhlwilm

Topic:  Reconstructing the genetic history of Central Eurasia

Tobias Göllner

Supervisor: Martin Fieder, Helmut Schaschl

Topic: The Peopling of Asia: Genetic Ancestry, Population Structure, Demography and Natural Selection

Sonja Kuderer

Supervisor: Martin Fieder, Sylvia Kirchengast

Topic: An interdisciplinary approach: the co-evolution of handedness, sensation seeking and anxiety

Savannah Schaufler

Supervisor: Harald Wilfing, Tatiana Konrad

Topic: Sustainability Reset: Questions of Behavioral and Cultural Changes Revealed by COVID-19

Katarina Matiasek

Supervisor: Harald Wilfing

Topic: Incorporations. Stereo Photography in Anthropology

Victoria Oberreiter

Supervisor: Ron Pinhasi, Thomas Rattei

Topic: Mineralogical Preservation of the Human Biome from the Depth of Time (MINERVA)

 

 

Inga Stolbovaya

Supervisor: Fred Bookstein, Gerhard Weber

Topic: 3D morphometric analysis of the human cranium for the investigation of posterior discrepancy

Constanze Hedwig Schattke

Supervisor: Harald Wilfing, Sabine Eggers

Topic: Witnesses of Violence? Combining Bioarchaeology and Provenance to research violence in the acquisition contexts of human remains in the Department of Anthropology, Natural History Museum Vienna from 1857 – 1935

Marcel Seifert

Supervisor: Harald Wilfing

Topic: Walk It Like You Talk It: Closing the Value-Action Gap in Climate Action with Experimental Evidence

Emily Pigott

Supervisor: Thomas Higham

Topic: Re-assessing human and faunal remains from the Middle to the Upper Palaeolithic archaeological sites within the Crimean Peninsula, using more recent protocols of radiocarbon dating.

Thomas Beard

Supervisor: Mareike Stahlschmidt

Topic: Providing (micro)context for Sediment DNA at Pleistocene Archaeological Sites

Magdalena T. Srienc-Ściesiek

Supervisor: Sylvia Kirchengast, Sabine Ladstätter

Topic: Lifeways of the early medieval Slavs: A bioarchaeological examination of diet and health based on the human remains from three cemeteries north and south of the Karawanken Mountains

Paul Klostermann

Supervisor: Sabine Eggers

Topic: Adolescence in the Early Medieval Age. A Bioarchaeological Analysis of Pubertal Timing in Central Europe.

Elöd Úry

Supervisor: Gerhard Weber

Topic: A 4D study of the mandibular guiding system: An integrated geometric morphometric approach 

Brina Zagorc

Supervisor: Maria Ivanova-Bieg, Ron Pinhasi

Topic: Sex-specific variations in the health status of subadult Central European skeletal populations during Antiquity and Early Medieval times

Liesa Geppner

Supervisor: Maja Henjakovic, Harald Wilfing

Topic: Micro- and nanoplastic: Methodology for extraction and detection of plastic particles from human blood and mammalian tissue.

Arne Bielke

Supervisor: Elmira Mohandesan & Katrin Schäfer 

Topic: Genome-wide Genetic Diversity, Ancestry and Inbreeding in New Zealand Feral Kaimanawa Horses 

Konstantina Cheshmedzhieva

Supervisor: Katerina Douka & Martin Kuhlwilm

Topic: Bone and sediment paleogenetics and paleoproteomics for mapping Denisovan presence in Southeast Asia and Oceania

Michelle Hämmerle

Supervisor: Martin Kuhlwilm & Pere Gelabert Xirinachs

Topic: Social Genomics in Late Antique and Early Medieval Societies

Heather Chamberlain-Irwin

Supervisors: Ron Pinhasi, Andrew Somerville (Iowa State University)

Topic: Using Ancient Crop DNA to investigate Socio-Political Changes


Evolutionary Zoology and Palaeobiology

Arnaud Begat

Supervisor: Jürgen Kriwet

Topic: Mesozoic elasmobranch fish (sharks, skates, and rays) ecology and diversity patterns before extinction events

 

 

Julian Bibermair

Supervisor: Thomas Schwaha

Topic: Evolution of phylactolaemate bryozoans

Alice Frisinghelli

Supervisor: Tim Wollesen

Topic: Mesoderm and Coelom formation in the arrow worm Spadella cephalopthera

Cristian Camilo Barrera Grijalba

Supervisor: Tim Wollesen

Topic: The adhesion system of Spadella cephaloptera

Willy De Mattia

Supervisor: Elisabeth Haring, Gerhard Steiner

Topic: Anatomical revision of Alopiinae (Gastropoda: Pulmonata: Clausiliidae): TesIng genital characters in clausiliid systematics

Margret Eckhard

Supervisor: Andreas Wanninger

Topic: Glue characterization in centipedes

Iris Fischer

Supervisor: Elisabeth Haring

Topic: Ecological status of aquatic habitats in Vienna: critical comparison of classical monitoring and molecular genetic methods to assess species distribution and composition of the dragonfly fauna

June Feliciano Fronda Ordonez

Supervisor: Tim Wollesen

Topic: Neuronal cell type development in the chaetognath Spadella cephaloptera

Sophie Greistorfer

Supervisor: Gerhard Steiner

Topic: Glowing mucus; Characterisation of the unique defence secretion of Latia neritoides (Gastropoda)

Anna-Maria Sabine Salgado-Gschwandner

Supervisor: Robert Ptacnik

Topic: Remoteness and size as determinants of Lake Ecosystem stability (RemoLake) 

Manuel A. Staggl

Supervisor: Jürgen Kriwet

Topic: Drivers of Elasmobranch Diversity in Deep Time

Anna-Chiara Barta

Supervisors: Luise Kruckenhauser & Martin Schwentner

Topic: Phylogeny and Evolution of Peracardia (Crustacea)

Mildred Jessica Johnson

Supervisor: Thomas Schwaha

Topic: The life cycle and systematics of the boring ctenostome bryozoan families Immergentiidae and Spathiporidae 

Claudia Klimpfinger

Supervisor: Jürgen Kriwet

Topic: Labial Cartilages in Sharks - an Anatomical Analysis of Present and Past Species

Giulia Marchioro

Supervisor: Luise Kruckenhauser, Pedro Frade, Igor Adameyko, Cecilia D'Angelo

Topic: Functional diversity of coral fluorescent proteins in mesophotic reefs

Katharina Mason

Supervisor: Elisabeth Haring

Topic: When genetics contradicts morphology: How does this affect our species concepts? 

Katharina Wechselberger

Supervisor: Harald Krenn

Topic: Analysis of the main factors influencing the behavior of wireworms (Coleoptera: Elateridae) as a basis for the optimization of available crop protection measures on arable land 

Gudrun Schwarze

Supervisor: Andreas Wanninger

Topic: Evolution and Development of worm snails (Vermetidae) 


Limnology

Pamela Alessandra Baur

Supervisor: Stephan Glatzel

Topic: Greenhouse gas exchanges of special wetland ecosystems in Austria

Pratiksha Acharya

Supervisor: Christian Griebler, Katrin Attermeyer, Simon Vitecek

Topic: Influence of resource and consumer diversity on the quality and microbial processing of fine particulate organic matter during leaf breakdown in streams

Constanze Englisch

Supervisor: Christian Griebler

Topic: Heat below the City - How increased temperature influences urban groundwater ecosystems

Anna-Maria Sabine Gschwandner

Supervisor: Robert Ptacnik

Topic: Remoteness and size as determinants of Lake Ecosystem stability (RemoLake)

Alice Retter

Supervisor: Christian Griebler, Fede Baltar, Henrik Nilsson

Topic: Vulnerability and response of microbial groundwater communities in alpine regions to anthropogenic impacts and climate change.

Francine Mathieu

Supervisor: Martin Kainz

Topic: Temporal dynamics of plankton food webs and sediments of young gravel pit lakes. 

Sonja Hoxha

Supervisor: Christian Griebler & Clemens Karwautz

Topic: Characterization of biogeochemical self-purification processes in the Vjosa River network with a focus on different spatial and temporal scales

Stefano Mari

Supervisor: Martin Kainz, Libor Zavorka

Topic: The importance of dietary omega 3 fatty acids for development of cognitive skills in wild fishes through the lens of Tingbergen’s four 

Filip-Paul Boanca

Supervisor: Christian Griebler & Clemens Karwautz 

Topic: Can microbes inform about vulnerability of spring waters — Assessment of microbial communities and water quality in Austrian springs

John Lester Viscara Pide

Supervisor: Christian Griebler

Topic: Intrinsic potential and activity of nitrate turnover examined for different hydrogeological aquifer settings

Helena Cvetkovic

Supervisor: Christian Griebler

Topic: Deciphering fluvial methane ebullition patterns and environmental drivers by viewing streams as heterogeneous landscapes 

Christoph Novotny

Supervisor: Christian Griebler

Topic: Hidden Life Below: Unearthing the secrets of Groundwater Biodiversity


Molecular Evolution and Development

Isha Joshi

Supervisor: Peter Schlögelhofer

Topic: Uncovering the Interrelation of DNA damage and Pathogen Response Pathways

Lisa Rouressol

Supervisor: Oleg Simakov, Margaret McFall-Ngai

Topic: Genomic novelty underlying symbiotic organ evolution in bobtail squids

Andreas Denner

Supervisor: Ulrich Technau

Topic: Characterization of putative stem cell marker genes in Nematostella vectensis

Patricio Ferrer Murguia

Supervisor: Ulrich Technau

Topic: Red Sea coral reefs: A Pleistocene - Recent comparison

Lubna Younas

Supervisor: Qi Zhou

Topic: Molecular mechanisms of tissue-specific dosage compensation in Drosophila species 

Paul Knabl

Supervisor: Grigory Genikhovich

Topic: BMP signaling in the cnidarian germ line

 

Koto Kon

Supervisor: Oleg Simakov

Topic: Elucidating the role of transposable element activity in hydra regeneration

Oliver Link

Supervisor: Ulrich Technau

Topic: On the origin and evolution of striated muscle cells: Insights into muscle cell transcriptomes from striated muscles of cnidarian jellyfish

Sanjay Narayanaswamy

Supervisor: Ulrich Technau

Topic: Assessing senescence in the regenerative and long lived Nematostella vectensis


Molecular Systems Biology

Fariha Naz Apon

Supervisor: Peter Schlögelhofer, Marie-Theres Hauser

Topic: Functions of cell wall integrity sensors in plant stress responses

Iro Pierides

Supervisor: Wolfram Weckwerth & Steffen Waldherr

Topic: Data-driven dynamic tools for multi-omics integration and control

Yovita Astuti Djohan

Supervisor: Stefanie Wienkoop

Topic: Stress-induced Pea-omics: Messire vs. Protecta

Shuang Zhang

Supervisor: Wolfram Weckwerth

Topic: Spatial Variability of Wheat Grain Protein Quality and Its Physiological Mechanism in Response to Different Ratios of Basal Nitrogen Fertilizer to Topdressing Nitrogen Fertilizer

Maryam Alsadat Zekri

Supervisor: Ingeborg Lang, Daniel Tholen

Topic: Water’s gateway to heaven 3D imaging and modeling of transient stomatal responses in plant leaves under dynamic environments

Hannes Kramml

Supervisor: Wolfram Weckwerth

Topic: Long-term implications of ancient polyploids: CAM as a key evolutionary innovation in Clusia spp.

Madeleine Schnurer

Supervisor: Verena Ibl

Topic: Characterization of TOL proteins in barley

Carlos A. Pérez Rízquez

Supervisor: Stefanie Wienkoop

Topic: Underlying mechanism(s) of the symbioprotein ferritin on legume root nodule formation and drought stress

 

 

Julian Preiner

Supervisor: Stefanie Wienkoop

Topic: Changes in C/N-metabolic processes and heavy metal stress response of leguminous plants (Glycine max) and their symbiotic partners during tungsten (W) and olybdenum (Mo) induced stress: An integrated proteomic, metabolomic and physiologic assessment. 

Stefan Plott

Supervisor: Wolfram Weckwerth, Verena Ibl

Topic: "ESCRT-Proteins and TOR as Regulators of Protein Turnover in Barley Grains"

Elisa Montrucchio

Supervisor: Claudia Jonak (AIT) & Markus Teige

Topic: The role of a GSK3 protein kinases in acclimation to drought and waterlogging

Caroline Ivesic

Supervisor:  Ingeborg Lang

Topic: Austrian carnivorous plants-roles of different glands

Luigi Schillaci

Supervisor: Ingeborg Lang & Harald Zechmeister

Topic: Toxic or just a nuisance - How mosses cope with heavy metals

Kaijie Liang

Supervisors: Wolfram Weckwerth, Steffen Waldherr

Topic: Genome Prediction and Functional Analysis in Large Germplasm Resources based on Omics Data and GWAS


Plant Evolutionary Biology

Teerna Saugata Khastgir

Supervisor: Ovidiu Paun

Topic: Comparative genomics and population genomics of the adaptive radiation of Diospyros on New Caledonia, a biodiversity hotspot

Sadia Sabrina Alam

Supervisor: Andreas Bachmair

Topic: The role of post-translational modifications (PTMs) in plant stress resilience

Johannes Maximilian Braunisch

Supervisor: Gerald Schneeweis

Topic: What determines distribution limits of range-restricted species in high-mountain habitats?

Lukas Dirr

Supervisor: Friðgeir Grímsson

Topic: The Application of Citizen-Science and Crowd-Sourced Data in the Field of Aerobiology

Xieting Wu

Supervisor: Jürg Schönenberger & Maria von Balthazar

Topic: Mesofossil flowers from the Late Cretaceous of Southern Bohemia

Christian Geier

Supervisor: Friðgeir Grímsson

Topic: Flower-insect interactions in the Eocene to Oligocene of Central Europe

 

 

 

Bushra Ijaz

Supervisor: Markus Teige & Andreas Bachmair

Topic: Targets of Ca2+-dependent protein kinases (CDPKs) in regulatory stress response networks

Vildana Kapetanovic

Supervisor: Hanna Schneeweiss

Topic: Diversity and evolution of chili peppers, the genus Capsicum (Solanaceae)

Karen Kölzer

Supervisor: Martina Weber

Topic: Authenticity of urban honey: Specific challenges for palynology and how diversification of methods can overcome them

Constantin Kopper

Supervisor: Jürg Schönenberger, Agnes Dellinger

Topic: Pollinations syndromes, pollinator shifts and floral evolution in Melastomataceae

Anna-Sophie Hawranek

Supervisor: Marion Chartier & Jürg Schönenberger 

Topic: Floral development, floral diversity, and pollination biology in the genus Aquilegia

Clemens Pachschwöll

Supervisor: Franz Essl, Gerald Schneeweiss

Topic: Detecting ‘invaders in disguise’  DNA barcoding of invasive plant species in Austria

Martin Rose

Supervisor: Michael Kiehn

Topic: Impact of trade restrictions on species survival

Benjamin Seth Lazarus

Supervisor: Agnes Dellinger

Topic: Investigating plant-pollinator interaction in Melastomataceae, the most morphologically diverse buzz-pollinated family

Francesca Beclin

Supervisor: Magnus Nordborg

Topic: The evolutionary history of an aberrant chromosome of the genus Aquilegia

Amin Ghane 

Supervisor: Ovidiu Paun

Topic: The role of structural variation in the adaptive radiation of New Caledonian persimmons (Diospyros) 


Theoretical Evolutionary Biology

Nina Kraus

Supervisor: Brian Metscher

Topic: Hemodynamic influences on heart morphogenesis of the developing chick outflow tract

Katharina Stefke

Supervisor: Philipp Mitteröcker, Frank Zachos

Topic: Morphometric and non-metric analyses in intraspecific variation in the red deer (Cervus elaphus) and their bearing upon evolutionary history and taxonomy

Inga Stolbovaya

Supervisor: Fred Bookstein, Gerhard Weber

Topic: 3D morphometric analysis of the human cranium for the investigation of posterior discrepancy


Tropical Ecology and Animal Biodiversity

Barbara Waringer

Supervisor: Christian H. Schulze

Topic: Clutch predation risk in ground nesting birds: effects of predator identity, habitat features and landscape structure.